modern bioprocess technologist

Like other applications of biotechnology, modern bioprocess technology is an extension of ancient techniques for developing useful products by taking advantage of natural biological activities. When our early ancestors made alcoholic beverages, they used a bioprocess: the combination of yeast cells and nutrients (cereal grains) formed a fermentation system in which the organisms consumed the nutrients for their own growth and produced by-products (alcohol and carbon dioxide gas) that helped to make the beverage.
Although more sophisticated, today's bioprocess technology is based on the same principle: combining living matter (whole organisms or enzymes) with nutrients under the conditions necessary to make the desired end product.

Sunday 20 March 2011

Lab 2:Measurement And Counting Of Cells Using Microscope

2.1 Ocular Micrometer
Introduction
An ocular micrometer is a glass disk that fits in a microscope eyepiece that has a ruled scale, which is used to measure the size of magnified objects. The physical length of the marks on the scale depend on the degree of magnification. A microscope can be used not only to see very small things but also to measure them.  Things seen in microscopes are so small that centimeters or even millimeters are too big.  As a result, micrometers (or microns) are used.    A micrometer, also written µm, is one thousandth of a millimeter - it's 10-6m.  For this, a micrometer eyepiece is used in place of the standard eyepiece of the microscope.  This has a series of numbered lines inside of it which make it look like a ruler (see image to the right, click on it to see a bigger version).  The images below show what the eyepiece looks like (with its protective box) and where to put it on the microscope. Attach the ocular micrometer to the microscope eyepiece by unscrewing the eyepiece cap, placing the ocular micrometer over the lens and screwing the eyepiece cap back into place. Slide the stage micrometer onto the microscope slide stage. Adjust the microscope to the lowest possible magnification. Move the stage micrometer until the measurement marks on the ocular micrometer superimpose with the measurement marks on the stage micrometer. By determining how many units of ocular micrometer superimpose a known distance on the stage micrometer, we can calculate the exact distance each ocular division measure on the microscopi field. When we change the objectives we must recalibrate the system. After calibration of the ocular micrometer, the stage micrometer is replaced with a slide containing microorganism. The dimensions of the cells may then be determind.



Ocular micrometer
Whenever  there is a need to make measurements with an ocular micrometer, there is also a need to ensure that the microscope is calibrated. The use of a stage micrometer to check the divisions and measurements on the ocular micrometer is the best way to achieve this calibration. There are a number of factors that can influence the true calibration:
Errors that may influence the correct measurement of a subject:
  • Any inherent inaccuracies of the objective lenses.
  • Inaccuracies in the ocular micrometer scale.
  • Human error in taking the measurement.



Examples of ocular micrometer











Procedure
Refer to the manual

Result
40 magnification
Observation
Length,mm
Width, mm
1
3.25
1.50
2
3.25
1.50
3
3.50
1.75
4
3.75
1.50
5
3.25
1.25
6
3.50
1.50
7
3.50
1.75
8
3.50
1.50
9
3.75
1.25
10
3.25
1.50
Total
34.50
15.00



100 magnification
Observation
Length,mm
Width,mm
1
3.4
1.1
2
3.3
1.0
3
3.3
1.1
4
3.5
1.1
5
3.3
1.2
6
3.4
1.0
7
3.4
1.1
8
3.3
1.0
9
3.3
1.1
10
3.5
1.2
Total
33.7
10.9


400 magnification
Observation
Length,mm
Width,mm
1
2.875
0.925
2
2.925
0.950
3
2.925
0.925
4
2.900
0.900
5
2.925
0.950
6
2.875
0.925
              7
2.900
0.925
8
2.900
0.925
9
2.925
0.900
10
2.900
0.900
Total
29.05
9.225


Discussion
Way to identify the length of each division in ocular micrometer scale:
        A typical scale consists of 50 - 100 divisions. We adjusted the focus of the eyepiece in order to make the scale as sharp as possible. The ocular scale must be calibrated, using a device called a stage micrometer. A stage micrometer is simply a microscope slide with a scale etched on the surface. A typical micrometer scale is 2 mm long and at least part of it should be etched with divisions of 0.01 mm (10 µm). The convension factor involved is calculated as the examples below.
The stage micrometer scale has divisions that are equal to 0.01 mm, which is 10 micrometers (µm).The scale is lined up with the ocular scale, and at 40 power of magnification it is observed that each micrometer division covers the same distance as 10 ocular divisions. Then one ocular division (smallest increment on the scale) = 1 µm at 10 power. The conversion to other magnifications is accomplished by factoring in the difference in magnification.
The calibration would be 2.5 µm at 40magnification,1 µm at 100 mignification and 0.25 µm at 400magnification.

For 40 power of magnification,
Average length 
= Total of exact distance
    Number of observation


 = 34.50
      10


= 3.45mm
Average width 
= Total of exact distance
    Number of observation


 = 15.00
     10


= 1.50mm

For 100 power of magnification,
Average length 
= Total of exact distance
    Number of observation


 = 33.70
      10


= 3.37mm
Average width 
= Total of exact distance
    Number of observation


 = 10.9
     10


= 1.09mm

For 400 power of magnification,
Average length 
= Total of exact distance
    Number of observation


 = 29.05
      10


= 2.905mm
Average width 
= Total of exact distance
    Number of observation


 = 9.225
      10


= 0.9225mm

Some stage micrometers are finely divided only at one end. These are particularly useful for determining the diameter of a microscope field. One of the larger divisions is positioned at one edge of the field of view, so that the fine part of the scale ovelaps the opposite side. The field diameter can then be determined to the maximum available precision.

In summary, these conversion factors can be apply to state each division of the eyepiece reticle is measured for a selected magnification.
X40        1 small division = 2.5 μm 
X100     1 small division = 1.0μm
X400     1 small division = 0.25μm

Ways for estimating and reporting dimensions:

We must be aware that even under the best of circumstances, the limit of resolution of the microscope is 1 or 2 µm (or worse) at any dry magnification, and 0.5 µm in oil immersion. We can’t directly measured linear dimension or value that is calculated from a linear dimension.The linear dimension should be reported with implied accuracy that is better than that. This includes means, surface areas,volumes, and any other derived values.






Examples














Conclusion
  1. Ocular micrometer serves as a scale or rule. Ocular micrometer is simply a disc of glass upon which are etched lines.

    The scale on ocular micrometer does not have any standard value. We can find out the value of one division of this unknown scale by calibrating it with a known scale.

    Thus actual value of one division of ocular micrometer is found by using another known scale, the stage micrometer. Stage micrometer is simply a microscope glass slide having in its centre a known (one millimeter) distance etched into 100 equally spaced divisions. Ocular micrometer is, therefore, calibrated under different objective lens systems of the microscope.



    By determining how many divisions of ocular micrometer superimpose a known distance on the stage micrometer we may find out the exact value of one division of ocular micrometer in the microscope field. Once calibrated, the ocular micrometer can be used to measure the size of various microbes in terms of length, breadth, diameter.


    Therefore, the dimensions of a microscopic object are measured with the aid of (i) special ocular containing graduated scale called ocular micrometer and (ii) stage micrometer. The measurements of a microscopic object required, first the standardization or calibration of ocular micrometer with the stage micrometer. This is done by replacing the normal eyepiece of the microscope with the ocular micrometer.  Then looked through, the ruled lines of ocular micrometer is observerd.

    When looked through normal ocular, the ruled lines of stage micrometer is observed. The suitable objective is used for the measurement of the specimen and ocular micrometer. The stage micrometer is brought to focus. So that the long axis of the two scales are aligned in parallel and the vertical rules of calibration lie over each other with both scales precisely in focus. The stage is moved so that one of the graduations of stage micrometer exactly coincides with the graduation of the ocular micrometer.
    Then, the scale is examined. Note: the situation above is repeated and the numbers of divisions of ocular micrometer are equivalent to the number of divisions of stage micrometer is calculated for every magnification.This is because the appearance of the ocular micrometer will not change with the changes in magnification(objective lenses),but the scale ont the stage micrometer will change with magnification.So, the ocular micrometer is needed to calibrated seperately with each objective lens. The value in terms of microns of one smallest scale union the ocular micrometer is derived.

    The value of each division of ocular micrometer depends on the length of microscope body tube and the objective used. On completion of ocular micrometer calibration, the stage micrometer is removed and the specimen to be measured is placed. The specimen is focused and the number' of divisions covered by the specimen is counted. The size of the specimen is calculated by multiplying the number of divisions covered by the specimen with value of unit division.

    Reference





    2.2 Neubauer Chamber

    Introduction
    The Neubauer Chamber is a device originally designed for the counting of blood cells. It is now also used to count other types of cells as well as other microscopic particles.Neubauer chamber is more convenient for counting microbes. Coverslips for Neubauer chambers are specially made and are thicker than those for conventional microscopy, since they must be heavy enough to overcome the surface tension of a drop of liquid. It contains two counting areas separated by a H-shape trough.  The coverslip is placed over the counting surface prior to putting on the cell suspension. The area under the coverslip fills by capillary action. The charged counting chamber is then placed on the microscope stage and the counting grid is brought into focus at low power. It is essential to be extremely careful with higher power objectives, since the counting chamber is much thicker than a conventional slide. The chamber or an objective lens may be damaged if the user is not careful. The main divisions separate the grid into 9 large squares (like a tic-tac-toe grid). Suspensions should be dilute enough so that the cells or other particles do not overlap each other on the grid, and should be uniformly distributed. To perform the count, determine the magnification needed to recognize the desired cell type.


    ANeubauer slide for cell counting.








    Microscope image of a Neubauer slide's graticule being used to count cells.



    A Neubauer slide held in place on a microscope stand by a slide clamp.











    Materials and Reagents
    Serial dilutions of bacteria cultures
    Neubauer and coverslip
    70% ethanol
    Sterile Pasteur pipettes
    Procedure
    Refer to the manual

    Counting
    1.      The chamber contains many grids, producing nine major large squares.
    2.      For calculation purpose, only the middle large square is used.
    3.      The middle large square has a size of 1mm x 1mm and a depth of 0.1mm.
    4.      Inside the middle large square, there are 16 smaller squares, each with the size of 0.25mm x 0.25mm.
    5.      Randomly choose 5 of these 16 smaller squares and calculate the number of cells in each of the square.
    6.      Average the number of cell per square.




    Results


    3



    2


    11







    2



    0




    1 small box      = (1mm ÷ 4)

                            =0.25mm

    Average of cell number           = (3+2+11+2+0) ÷ 5

                                                    = 3.6



    Volume of one small box        = area x depth

                                                    = 0.25mm x 0.25mm x 0.1 mm

                                                    = 6.25 x 10-6mL

    Concentration of cell  = average of cell ÷ volume

                                        = 3.6 ÷ (6.25 x 10-6mL)

                                        = 576000 cells/mL





    Discussion

    In order to obtain accurate results from an experiment system and reduce variation within experiments it is essential the desired number of cells be known before the assay is started. Using a Neubauer chamber to count cells is still a widely used method, with a majority of labs containing at least one glassNeubauer chamber. The number of cells is usually expressed as cells/ml.

    There are several key factors for counting using aNeubauer chamber. First, avoid improper filling of chambers (too much or too little). Second, representative sample taken is counted with the pipette and no air bubbles are trapped. In addition, the total number of chambers counted within theNeubauer chamber. Last but not least, the numbers of cells are counted.One of the few drawbacks of counting cells is that it can be labour-intensive, as well as not being able to distinguish between living and dead cells.

    Cells that are on the line of a grid require special attention. Cells that touch the top and right lines of a square should not be counted, cells on the bottom and left side should be counted.

     The lower the concentration, the more squares should be counted. Otherwise one introduces statistical errors. Way to find out one squareis to calculate the cell concentration per ml based on the numbers obtained from 2 different squares. If the final result is very different, then this can be an indication of sampling error.

                Things that we need to pay more attention when carry out this experiment. First is the type of counting chambers. There are different types of counting chambers available, with different grid sizes. One counting chamber also has grids of different sizes. We must know the grid size and height (read the instruction manual) otherwise we’ll make calculation errors. Then, the cover glasses are used. They are thicker than the standard 0.15mm cover glasses. Therefore they are less flexible and the surface tension of the fluid will not deform them. This way the height of the fluid is standardized. Next we should pay attention on moving cell. Moving cells (such as sperm cells) are difficult to count. These cells must first be immobilized.The objective of Neubauer chamber is much thicker than a regular slide. Do not crash the objective into the Neubauer chamber when focusing.





    Conclusion

    The Neubauer chamber is a specimen slide which consists of a grid of etched squares of a given area and is covered with a glass slip that positioned a fixed distance from the etched surface. It is used to determine the concentration of cells in a liquid sample. Counts are usually made at about 400X magnification. The number of cells in a population can be measured by taking direct microscopic count usingNeubauer chamber(to larger eukaryotic microorganisms).Total number of microorganisms in a sample can be calculated taking the count of number of bacteria per unit area.The volume of liquid within the etched square equals the area of the square times the depth of the film. The average cell count per square multiplied by thr reciprocal of the volume in millilitres will equal the concentration of the microorganism in the diluent. Chamber factors commonly range from 4x106to 2x107. Thus the procedure is most applicable to foods that contain large microbial population. Cell counts obtained using Neubauer chamber is consistent. Therefore, Neubauer chamber is more convenient for counting microbes.





    Reference
    http://en.wikipedia.org/wiki/Microscope_slide
    http://en.wikipedia.org/wiki/Hemocytometer
    http://www.emsdiasum.com/microscopy/products/magnifier/counting.aspx



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